U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105642601 protein CLP1 homolog [ Jatropha curcas ]

Gene ID: 105642601, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105642601
Gene description
protein CLP1 homolog
Locus tag
JCGZ_09720
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105642601 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591682.1 (1729200..1735111, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124087.1 (1968625..1974546)

NW_023591682.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119371380 Neighboring gene uncharacterized LOC105640971 Neighboring gene protein arginine methyltransferase NDUFAF7, mitochondrial Neighboring gene transfer RNA leucine (anticodon CAA)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polynucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein CLP1 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591682.1 Reference RJC1_Hi-C Primary Assembly

    Range
    1729200..1735111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012227481.3 → XP_012082871.1  protein CLP1 homolog

    See identical proteins and their annotated locations for XP_012082871.1

    UniProtKB/TrEMBL
    A0A067LAH8
    Conserved Domains (4) summary
    COG5623
    Location:18 → 437
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam06807
    Location:326 → 437
    Clp1; Pre-mRNA cleavage complex II protein Clp1
    pfam16573
    Location:21 → 113
    CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor
    pfam16575
    Location:133 → 320
    CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases