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LOC105638024 uncharacterized LOC105638024 [ Jatropha curcas ]

Gene ID: 105638024, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105638024
Gene description
uncharacterized LOC105638024
Locus tag
JCGZ_07540
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105638024 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590909.1 (1301360..1304170, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124394.1 (3300243..3303045, complement)

NW_023590909.1Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A Neighboring gene AT-rich interactive domain-containing protein 4 Neighboring gene ATP-dependent RNA helicase DEAH12, chloroplastic Neighboring gene uncharacterized LOC119369996

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC105638024

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590909.1 Reference RJC1_Hi-C Primary Assembly

    Range
    1301360..1304170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012221729.3 → XP_012077119.1  uncharacterized protein LOC105638024

    See identical proteins and their annotated locations for XP_012077119.1

    UniProtKB/TrEMBL
    A0A067KQ64
    Conserved Domains (1) summary
    smart00353
    Location:213 → 261
    HLH; helix loop helix domain

  2. XM_012221732.3 → XP_012077122.1  uncharacterized protein LOC105638024

    See identical proteins and their annotated locations for XP_012077122.1

    UniProtKB/TrEMBL
    A0A067KQ64
    Conserved Domains (1) summary
    smart00353
    Location:213 → 261
    HLH; helix loop helix domain

  3. XM_012221731.3 → XP_012077121.1  uncharacterized protein LOC105638024

    See identical proteins and their annotated locations for XP_012077121.1

    UniProtKB/TrEMBL
    A0A067KQ64
    Conserved Domains (1) summary
    smart00353
    Location:213 → 261
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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