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LOC105637470 elongation factor 1-alpha [ Jatropha curcas ]

Gene ID: 105637470, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105637470
Gene description
elongation factor 1-alpha
Locus tag
JCGZ_07011
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105637470 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591200.1 (898306..904199, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124394.1 (206237..212113)

NW_023591200.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 87A3 Neighboring gene small nucleolar RNA R71 Neighboring gene protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic Neighboring gene replication protein A 32 kDa subunit A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591200.1 Reference RJC1_Hi-C Primary Assembly

    Range
    898306..904199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012220939.3 → XP_012076329.1  elongation factor 1-alpha isoform X1

    Conserved Domains (5) summary
    cd01883
    Location:341 → 560
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:340 → 763
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    sd00029
    Location:46 → 65
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cd16267
    Location:567 → 651
    HBS1-like_II; Domain II of Hbs1-like proteins
    cd04093
    Location:655 → 763
    HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)

  2. XM_012220940.3 → XP_012076330.1  elongation factor 1-alpha isoform X2

    See identical proteins and their annotated locations for XP_012076330.1

    UniProtKB/TrEMBL
    A0A067KMC2
    Conserved Domains (5) summary
    cd01883
    Location:289 → 508
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:288 → 711
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    sd00029
    Location:46 → 65
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cd16267
    Location:515 → 599
    HBS1-like_II; Domain II of Hbs1-like proteins
    cd04093
    Location:603 → 711
    HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)
Nucleotide Protein
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