U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105636862 30-kDa cleavage and polyadenylation specificity factor 30 [ Jatropha curcas ]

Gene ID: 105636862, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105636862
Gene description
30-kDa cleavage and polyadenylation specificity factor 30
Locus tag
JCGZ_09230
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105636862 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590789.1 (10622720..10632923)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124357.1 (1353230..1363251, complement)

NW_023590789.1Genomic Context describing neighboring genes Neighboring gene 187-kDa microtubule-associated protein AIR9 Neighboring gene accelerated cell death 11 Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit 2 Neighboring gene phenylalanine--tRNA ligase beta subunit, cytoplasmic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N6-methyladenosine-containing RNA reader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590789.1 Reference RJC1_Hi-C Primary Assembly

    Range
    10622720..10632923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037636048.1 → XP_037491976.1  LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30

    UniProtKB/TrEMBL
    A0A067KFN7
    Conserved Domains (2) summary
    COG5084
    Location:66 → 145
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    pfam04146
    Location:283 → 422
    YTH; YT521-B-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases