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LOC105630768 probable beta-1,4-xylosyltransferase IRX9H [ Jatropha curcas ]

Gene ID: 105630768, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105630768
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
JCGZ_15945
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC105630768 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590956.1 (3587297..3589180, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124173.1 (2730069..2733380, complement)

NW_023590956.1Genomic Context describing neighboring genes Neighboring gene probable aspartyl aminopeptidase Neighboring gene hypothetical protein Neighboring gene R3H domain-containing protein 2 Neighboring gene protein DETOXIFICATION 48 Neighboring gene sucrose transport protein SUC4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590956.1 Reference RJC1_Hi-C Primary Assembly

    Range
    3587297..3589180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037637519.1 → XP_037493447.1  probable beta-1,4-xylosyltransferase IRX9H isoform X2

    Conserved Domains (1) summary
    pfam03360
    Location:149 → 357
    Glyco_transf_43; Glycosyltransferase family 43

  2. XM_037637518.1 → XP_037493446.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    UniProtKB/TrEMBL
    A0A067L2R8
    Conserved Domains (1) summary
    cd00218
    Location:165 → 394
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

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