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LOC105630065 starch synthase 1, chloroplastic/amyloplastic [ Jatropha curcas ]

Gene ID: 105630065, updated on 18-Sep-2024

Summary

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Gene symbol
LOC105630065
Gene description
starch synthase 1, chloroplastic/amyloplastic
Locus tag
JCGZ_03263
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105630065 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590789.1 (13516708..13523624, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124168.1 (17911..24435)

NW_023590789.1Genomic Context describing neighboring genes Neighboring gene protein Ycf2-like Neighboring gene protein Ycf2-like Neighboring gene 50S ribosomal protein L2, chloroplastic Neighboring gene protein MICRORCHIDIA 7 Neighboring gene leucine-rich repeat extensin-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590789.1 Reference RJC1_Hi-C Primary Assembly

    Range
    13516708..13523624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037636374.1 → XP_037492302.1  starch synthase 1, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A067L0U4
    Conserved Domains (1) summary
    cd03791
    Location:137 → 636
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  2. XM_012211750.3 → XP_012067140.1  starch synthase 1, chloroplastic/amyloplastic isoform X2

    See identical proteins and their annotated locations for XP_012067140.1

    UniProtKB/TrEMBL
    A0A067L0U4
    Conserved Domains (1) summary
    cd03791
    Location:137 → 636
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  3. XM_020677770.1 → XP_020533429.1  starch synthase 1, chloroplastic/amyloplastic isoform X3

    Conserved Domains (1) summary
    cd03791
    Location:48 → 547
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...

  4. XM_037636375.1 → XP_037492303.1  starch synthase 1, chloroplastic/amyloplastic isoform X4

    Conserved Domains (1) summary
    cd03791
    Location:1 → 465
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
Nucleotide Protein
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