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LOC105629679 regulator of nonsense transcripts UPF3 [ Jatropha curcas ]

Gene ID: 105629679, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105629679
Gene description
regulator of nonsense transcripts UPF3
Locus tag
JCGZ_00256
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105629679 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591552.1 (222563..230942)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124153.1 (527567..535947, complement)

NW_023591552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105629681 Neighboring gene KH domain-containing protein At1g09660/At1g09670 Neighboring gene prolycopene isomerase, chloroplastic Neighboring gene shaggy-related protein kinase kappa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts UPF3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591552.1 Reference RJC1_Hi-C Primary Assembly

    Range
    222563..230942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020677586.1 → XP_020533245.1  regulator of nonsense transcripts UPF3 isoform X1

    Conserved Domains (1) summary
    pfam03467
    Location:5 → 168
    Smg4_UPF3; Smg-4/UPF3 family

  2. XM_020677585.1 → XP_020533244.1  regulator of nonsense transcripts UPF3 isoform X1

    Conserved Domains (1) summary
    pfam03467
    Location:5 → 168
    Smg4_UPF3; Smg-4/UPF3 family

  3. XM_020677587.1 → XP_020533246.1  regulator of nonsense transcripts UPF3 isoform X2

    UniProtKB/TrEMBL
    A0A067LED6
    Conserved Domains (1) summary
    pfam03467
    Location:5 → 168
    Smg4_UPF3; Smg-4/UPF3 family

  4. XM_012211306.2 → XP_012066696.1  regulator of nonsense transcripts UPF3 isoform X3

    Conserved Domains (1) summary
    pfam03467
    Location:5 → 168
    Smg4_UPF3; Smg-4/UPF3 family
Nucleotide Protein
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