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LOC105627455 collagen alpha-2(IX) chain [ Atta cephalotes ]

Gene ID: 105627455, updated on 13-Feb-2021

Summary

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Gene symbol
LOC105627455
Gene description
collagen alpha-2(IX) chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Atta cephalotes
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta
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Genomic context

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See LOC105627455 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Attacep1.0 (GCF_000143395.1) Unplaced Scaffold NW_012130073.1 (2563639..2581126)

NW_012130073.1Genomic Context describing neighboring genes Neighboring gene Myc Neighboring gene uncharacterized LOC105627620 Neighboring gene THO complex 1-like protein Hpr1 Neighboring gene Putative homeodomain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012130073.1 Unplaced Scaffold Reference Attacep1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-2(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Atta cephalotes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Attacep1.0

Genomic

  1. NW_012130073.1 Reference Attacep1.0

    Range
    2563639..2581126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012208738.1 → XP_012064128.1  collagen alpha-2(IX) chain

    UniProtKB/TrEMBL
    A0A158P2X0
    Conserved Domains (2) summary
    pfam01391
    Location:147 → 206
    Collagen; Collagen triple helix repeat (20 copies)
    cd00247
    Location:634 → 803
    Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...
Nucleotide Protein
Heading Accession and Version

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