U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105619235 alkylated DNA repair protein alkB homolog 8 [ Atta cephalotes ]

Gene ID: 105619235, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105619235
Gene description
alkylated DNA repair protein alkB homolog 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Atta cephalotes
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta
Orthologs
fruit fly honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105619235 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Attacep1.0 (GCF_000143395.1) Unplaced Scaffold NW_012130084.1 (553981..557095, complement)

NW_012130084.1Genomic Context describing neighboring genes Neighboring gene scruin like at the midline Neighboring gene exosome complex component Rrp45 Neighboring gene small ubiquitin-related modifier-like Neighboring gene orion

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012130084.1 Unplaced Scaffold Reference Attacep1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Atta cephalotes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Attacep1.0

Genomic

  1. NW_012130084.1 Reference Attacep1.0

    Range
    553981..557095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012200758.1 → XP_012056148.1  alkylated DNA repair protein alkB homolog 8

    UniProtKB/TrEMBL
    A0A158NF40
    Conserved Domains (3) summary
    cd12431
    Location:43 → 121
    RRM_ALKBH8; RNA recognition motif in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    pfam08241
    Location:399 → 489
    Methyltransf_11; Methyltransferase domain
    cl21496
    Location:137 → 326
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases