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DGCR2 DiGeorge syndrome critical region gene 2 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105601311, updated on 13-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
Ensembl:ENSCATG00000031705
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012002777.1 (1215092..1300639)

NW_012002777.1Genomic Context describing neighboring genes Neighboring gene ess-2 splicing factor homolog Neighboring gene testis-specific serine/threonine-protein kinase 1-like Neighboring gene testis specific serine kinase 2 Neighboring gene uncharacterized LOC105601310 Neighboring gene putative POM121-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012002777.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012002777.1 Reference Caty_1.0

    Range
    1215092..1300639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012093440.1 → XP_011948830.1  integral membrane protein DGCR2/IDD isoform X1

    See identical proteins and their annotated locations for XP_011948830.1

    UniProtKB/TrEMBL
    A0A2K5LR92, A0A2K5LRA2
    Related
    ENSCATP00000015454.1, ENSCATT00000039608.1
    Conserved Domains (4) summary
    cd03599
    Location:115 → 267
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:271 → 329
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam04534
    Location:426 → 474
    Herpes_UL56; Herpesvirus UL56 protein

  2. XM_012093441.1 → XP_011948831.1  integral membrane protein DGCR2/IDD isoform X2

    See identical proteins and their annotated locations for XP_011948831.1

    UniProtKB/TrEMBL
    A0A2K5LRA2
    Related
    ENSCATP00000015464.1, ENSCATT00000039618.1
    Conserved Domains (4) summary
    cd03599
    Location:112 → 264
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam04534
    Location:423 → 471
    Herpes_UL56; Herpesvirus UL56 protein
Nucleotide Protein
Heading Accession and Version

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