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L1CAM L1 cell adhesion molecule [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105598725, updated on 13-Mar-2024

Summary

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Gene symbol
L1CAM
Gene description
L1 cell adhesion molecule
See related
Ensembl:ENSCATG00000041515
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See L1CAM in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012002313.1 (413251..438313)

NW_012002313.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 4 Neighboring gene arginine vasopressin receptor 2 Neighboring gene PDZ domain containing 4 Neighboring gene signal sequence receptor subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012002313.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012002313.1 Reference Caty_1.0

    Range
    413251..438313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012088360.1 → XP_011943750.1  neural cell adhesion molecule L1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5NJB3, A0A2K5NJH4
    Related
    ENSCATP00000037602.1, ENSCATT00000061899.1
    Conserved Domains (10) summary
    cd05731
    Location:260 → 330
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05733
    Location:53 → 130
    Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:347 → 422
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00408
    Location:532 → 594
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:249 → 329
    IG_like; Immunoglobulin like
    cd00063
    Location:612 → 709
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:519 → 608
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:824 → 907
    fn3; Fibronectin type III domain
    pfam13882
    Location:1144 → 1233
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 228
    Ig; Immunoglobulin domain

  2. XM_012088361.1 → XP_011943751.1  neural cell adhesion molecule L1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5NJA3, A0A2K5NJB3
    Related
    ENSCATP00000037609.1, ENSCATT00000061906.1
    Conserved Domains (10) summary
    cd05731
    Location:260 → 330
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05733
    Location:53 → 130
    Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:347 → 422
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00408
    Location:532 → 594
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:249 → 329
    IG_like; Immunoglobulin like
    cd00063
    Location:612 → 709
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:519 → 608
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:824 → 907
    fn3; Fibronectin type III domain
    pfam13882
    Location:1144 → 1229
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:134 → 228
    Ig; Immunoglobulin domain

  3. XM_012088362.1 → XP_011943752.1  neural cell adhesion molecule L1 isoform X4

    UniProtKB/TrEMBL
    A0A2K5NJB3
    Conserved Domains (10) summary
    cd05731
    Location:255 → 325
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05733
    Location:48 → 125
    Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:342 → 417
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00408
    Location:527 → 589
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:244 → 324
    IG_like; Immunoglobulin like
    cd00063
    Location:607 → 704
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:514 → 603
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:819 → 902
    fn3; Fibronectin type III domain
    pfam13882
    Location:1139 → 1228
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:129 → 223
    Ig; Immunoglobulin domain

  4. XM_012088363.1 → XP_011943753.1  neural cell adhesion molecule L1 isoform X5

    UniProtKB/TrEMBL
    A0A2K5NJB3, A0A2K5NJN8
    Related
    ENSCATP00000037610.1, ENSCATT00000061907.1
    Conserved Domains (10) summary
    cd05731
    Location:255 → 325
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05733
    Location:48 → 125
    Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:342 → 417
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00408
    Location:527 → 589
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:244 → 324
    IG_like; Immunoglobulin like
    cd00063
    Location:607 → 704
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:514 → 603
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:819 → 902
    fn3; Fibronectin type III domain
    pfam13882
    Location:1139 → 1224
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:129 → 223
    Ig; Immunoglobulin domain

  5. XM_012088359.1 → XP_011943749.1  neural cell adhesion molecule L1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5NJB2
    Conserved Domains (10) summary
    cd05731
    Location:327 → 397
    Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    cd05733
    Location:120 → 197
    Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    cd05867
    Location:414 → 489
    Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
    smart00408
    Location:599 → 661
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:316 → 396
    IG_like; Immunoglobulin like
    cd00063
    Location:679 → 776
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:586 → 675
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:891 → 974
    fn3; Fibronectin type III domain
    pfam13882
    Location:1211 → 1300
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:201 → 295
    Ig; Immunoglobulin domain
Nucleotide Protein
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