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CHPF2 chondroitin polymerizing factor 2 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105584748, updated on 13-Mar-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
See related
Ensembl:ENSCATG00000037379
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012008583.1 (8549782..8556063)

NW_012008583.1Genomic Context describing neighboring genes Neighboring gene histone H2B-like Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene negative regulator of ubiquitin like proteins 1 Neighboring gene WD repeat domain 86

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012008583.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012008583.1 Reference Caty_1.0

    Range
    8549782..8556063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012057749.1 → XP_011913139.1  chondroitin sulfate glucuronyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A2K5MSF7, A0A2K5MSR1
    Related
    ENSCATP00000028125.1, ENSCATT00000052376.1
    Conserved Domains (2) summary
    pfam05679
    Location:242 → 759
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177 → 269
    Galactosyl_T; Galactosyltransferase

  2. XM_012057750.1 → XP_011913140.1  chondroitin sulfate glucuronyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2K5MSD4, A0A2K5MSF7
    Related
    ENSCATP00000028126.1, ENSCATT00000052377.1
    Conserved Domains (2) summary
    pfam05679
    Location:242 → 698
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177 → 269
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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