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HPSE heparanase [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105576795, updated on 13-Mar-2024

Summary

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Gene symbol
HPSE
Gene description
heparanase
See related
Ensembl:ENSCATG00000007349
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See HPSE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012004825.1 (9742721..9785552)

NW_012004825.1Genomic Context describing neighboring genes Neighboring gene helicase, POLQ like Neighboring gene UPF0711 protein C18orf21-like Neighboring gene coenzyme Q2, polyprenyltransferase Neighboring gene aminomethyltransferase, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012004825.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012004825.1 Reference Caty_1.0

    Range
    9742721..9785552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012040248.1 → XP_011895638.1  heparanase isoform X1

    UniProtKB/TrEMBL
    A0A2K5KLM8, A0A2K5KLN5
    Related
    ENSCATP00000001600.1, ENSCATT00000008213.1
    Conserved Domains (1) summary
    pfam03662
    Location:167 → 366
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

  2. XM_012040249.1 → XP_011895639.1  heparanase isoform X2

    UniProtKB/TrEMBL
    A0A2K5KLN5
    Conserved Domains (1) summary
    pfam03662
    Location:167 → 366
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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