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LOC105559828 transmembrane and TPR repeat-containing protein 1-like [ Vollenhovia emeryi ]

Gene ID: 105559828, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105559828
Gene description
transmembrane and TPR repeat-containing protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vollenhovia emeryi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Vollenhovia
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Genomic context

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See LOC105559828 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current V.emery_V1.0 (GCF_000949405.1) Unplaced Scaffold NW_011967114.1 (121995..316511)

NW_011967114.1Genomic Context describing neighboring genes Neighboring gene trypsin-1-like Neighboring gene trypsin-1-like Neighboring gene UDP-glucuronosyltransferase 2C1-like Neighboring gene myrosinase 1-like Neighboring gene myrosinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011967114.1 Unplaced Scaffold Reference V.emery_V1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vollenhovia emeryi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference V.emery_V1.0

Genomic

  1. NW_011967114.1 Reference V.emery_V1.0

    Range
    121995..316511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012008432.1 → XP_011863822.1  transmembrane and TPR repeat-containing protein 1-like isoform X3

    See identical proteins and their annotated locations for XP_011863822.1

    Conserved Domains (4) summary
    sd00006
    Location:352 → 380
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:161 → 233
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:416 → 447
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:386 → 447
    TPR_11; TPR repeat

  2. XM_012008433.1 → XP_011863823.1  transmembrane and TPR repeat-containing protein 1-like isoform X3

    See identical proteins and their annotated locations for XP_011863823.1

    Conserved Domains (4) summary
    sd00006
    Location:352 → 380
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:161 → 233
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:416 → 447
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:386 → 447
    TPR_11; TPR repeat

  3. XM_012008430.1 → XP_011863820.1  transmembrane and TPR repeat-containing protein 1-like isoform X1

    Conserved Domains (4) summary
    sd00006
    Location:463 → 491
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:272 → 344
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:527 → 558
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:497 → 558
    TPR_11; TPR repeat

  4. XM_012008431.1 → XP_011863821.1  transmembrane and TPR repeat-containing protein 1-like isoform X2

    Conserved Domains (4) summary
    sd00006
    Location:463 → 491
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:272 → 344
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:527 → 558
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:497 → 558
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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