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GPC3 glypican 3 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105554743, updated on 13-Mar-2024

Summary

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Gene symbol
GPC3
Gene description
glypican 3
See related
Ensembl:ENSMLEG00000037061
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See GPC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012107130.1 (300420..762384, complement)

NW_012107130.1Genomic Context describing neighboring genes Neighboring gene glypican 4 Neighboring gene 40S ribosomal protein S24-like Neighboring gene 40S ribosomal protein SA pseudogene Neighboring gene 5'-nucleotidase domain-containing protein 1 pseudogene Neighboring gene coiled-coil domain containing 160

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012107130.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012107130.1 Reference Mleu.le_1.0

    Range
    300420..762384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012001312.1 → XP_011856702.1  glypican-3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5ZD38
    Related
    ENSMLEP00000025734.1, ENSMLET00000049268.1
    Conserved Domains (1) summary
    pfam01153
    Location:53 → 639
    Glypican; Glypican

  2. XM_012001313.1 → XP_011856703.1  glypican-3 isoform X2

    UniProtKB/TrEMBL
    A0A2K5ZD38
    Related
    ENSMLEP00000025735.1, ENSMLET00000049269.1
    Conserved Domains (1) summary
    pfam01153
    Location:14 → 561
    Glypican; Glypican

  3. XM_012001314.1 → XP_011856704.1  glypican-3 isoform X3

    UniProtKB/TrEMBL
    A0A2K5ZD38, A0A2K5ZD43
    Related
    ENSMLEP00000025739.1, ENSMLET00000049273.1
    Conserved Domains (1) summary
    pfam01153
    Location:14 → 523
    Glypican; Glypican
Nucleotide Protein
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