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SGCA sarcoglycan alpha [ Mandrillus leucophaeus (drill) ]

Gene ID: 105553267, updated on 13-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
Ensembl:ENSMLEG00000028724
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012106363.1 (3609665..3621917, complement)

NW_012106363.1Genomic Context describing neighboring genes Neighboring gene small ubiquitin-related modifier 2 pseudogene Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14 Neighboring gene pyruvate dehydrogenase kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012106363.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012106363.1 Reference Mleu.le_1.0

    Range
    3609665..3621917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011999269.1 → XP_011854659.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2K5Y0F1
    Related
    ENSMLEP00000009026.1, ENSMLET00000032425.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 195
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_011999268.1 → XP_011854658.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2K5Y0F6
    Related
    ENSMLEP00000009031.1, ENSMLET00000032430.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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