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FUBP1 far upstream element binding protein 1 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105551928, updated on 13-Mar-2024

Summary

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Gene symbol
FUBP1
Gene description
far upstream element binding protein 1
See related
Ensembl:ENSMLEG00000032973
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See FUBP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012105797.1 (503239..542085, complement)

NW_012105797.1Genomic Context describing neighboring genes Neighboring gene mitoguardin 1 Neighboring gene nuclear speckle splicing regulatory protein 1 pseudogene Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene nexilin F-actin binding protein Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene omega-amidase NIT2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012105797.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012105797.1 Reference Mleu.le_1.0

    Range
    503239..542085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011997375.1 → XP_011852765.1  far upstream element-binding protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011852765.1

    UniProtKB/TrEMBL
    A0A2K5YS75, A0A2K5YSB6
    Related
    ENSMLEP00000018406.1, ENSMLET00000041891.1
    Conserved Domains (3) summary
    cd00105
    Location:278 → 339
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:102 → 166
    KH_1; KH domain
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)

  2. XM_011997374.1 → XP_011852764.1  far upstream element-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011852764.1

    UniProtKB/TrEMBL
    A0A2K5YSC3
    Related
    ENSMLEP00000018461.1, ENSMLET00000041946.1
    Conserved Domains (5) summary
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  3. XM_011997376.1 → XP_011852766.1  far upstream element-binding protein 1 isoform X3

    See identical proteins and their annotated locations for XP_011852766.1

    UniProtKB/TrEMBL
    A0A2K5YSB8
    Related
    ENSMLEP00000018422.1, ENSMLET00000041907.1
    Conserved Domains (2) summary
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:98 → 172
    KH-I; K homology (KH) RNA-binding domain, type I

RNA

  1. XR_001007921.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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