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PCBP4 poly(rC) binding protein 4 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105544027, updated on 13-Mar-2024

Summary

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Gene symbol
PCBP4
Gene description
poly(rC) binding protein 4
See related
Ensembl:ENSMLEG00000027083
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See PCBP4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012103098.1 (3317902..3327670)

NW_012103098.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 14A Neighboring gene abhydrolase domain containing 14B Neighboring gene G protein-coupled receptor 62 Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene ribosomal RNA processing 9, U3 small nucleolar RNA binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012103098.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(rC)-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012103098.1 Reference Mleu.le_1.0

    Range
    3317902..3327670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011986261.1 → XP_011841651.1  poly(rC)-binding protein 4 isoform X1

    See identical proteins and their annotated locations for XP_011841651.1

    UniProtKB/TrEMBL
    A0A2K5XUD4
    Conserved Domains (2) summary
    cd00105
    Location:266 → 328
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:126 → 190
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  2. XM_011986262.1 → XP_011841652.1  poly(rC)-binding protein 4 isoform X2

    See identical proteins and their annotated locations for XP_011841652.1

    UniProtKB/TrEMBL
    A0A2K5XUB4, A0A2K5XUD4
    Related
    ENSMLEP00000006870.1, ENSMLET00000030118.1
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  3. XM_011986263.1 → XP_011841653.1  poly(rC)-binding protein 4 isoform X3

    See identical proteins and their annotated locations for XP_011841653.1

    UniProtKB/TrEMBL
    A0A2K5XU86, A0A2K5XUD4
    Related
    ENSMLEP00000006876.1, ENSMLET00000030125.1
    Conserved Domains (3) summary
    cd00105
    Location:200 → 262
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:19 → 80
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
    cl00098
    Location:103 → 137
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
Nucleotide Protein
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