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NCAM1 neural cell adhesion molecule 1 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105537424, updated on 13-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
See related
Ensembl:ENSMLEG00000028968
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012101721.1 (2661984..2975715)

NW_012101721.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105537420 Neighboring gene uncharacterized LOC105537422 Neighboring gene uncharacterized LOC105537425 Neighboring gene uncharacterized LOC105537423 Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene ankyrin repeat and kinase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012101721.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012101721.1 Reference Mleu.le_1.0

    Range
    2661984..2975715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011977014.1 → XP_011832404.1  neural cell adhesion molecule 1 isoform X1

    Conserved Domains (8) summary
    cd05869
    Location:306 → 412
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:124 → 190
    IG; Immunoglobulin
    pfam05109
    Location:869 → 1149
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00041
    Location:647 → 728
    fn3; Fibronectin type III domain
    pfam13927
    Location:421 → 493
    Ig_3; Immunoglobulin domain
    cd00096
    Location:211 → 216
    Ig; Ig strand A [structural motif]
    cd05865
    Location:20 → 116
    IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  2. XM_011977015.1 → XP_011832405.1  neural cell adhesion molecule 1 isoform X2

    See identical proteins and their annotated locations for XP_011832405.1

    UniProtKB/TrEMBL
    A0A2K5Y6W5
    Related
    ENSMLEP00000011306.1, ENSMLET00000034730.1
    Conserved Domains (7) summary
    cd05869
    Location:306 → 412
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    pfam00041
    Location:613 → 694
    fn3; Fibronectin type III domain
    pfam13927
    Location:421 → 493
    Ig_3; Immunoglobulin domain
    cd00096
    Location:211 → 216
    Ig; Ig strand A [structural motif]
    cd05865
    Location:20 → 116
    IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  3. XM_011977016.1 → XP_011832406.1  neural cell adhesion molecule 1 isoform X3

    See identical proteins and their annotated locations for XP_011832406.1

    UniProtKB/TrEMBL
    A0A2K5Y6P9, A0A2K5Y6W5
    Related
    ENSMLEP00000011209.1, ENSMLET00000034632.1
    Conserved Domains (8) summary
    cd05869
    Location:306 → 402
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:603 → 684
    fn3; Fibronectin type III domain
    pfam13927
    Location:411 → 483
    Ig_3; Immunoglobulin domain
    cd00096
    Location:211 → 216
    Ig; Ig strand A [structural motif]
    cd05865
    Location:20 → 116
    IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  4. XM_011977017.1 → XP_011832407.1  neural cell adhesion molecule 1 isoform X4

    See identical proteins and their annotated locations for XP_011832407.1

    UniProtKB/TrEMBL
    A0A2K5Y6P3, A0A2K5Y715
    Related
    ENSMLEP00000011213.1, ENSMLET00000034636.1
    Conserved Domains (7) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig_NCAM-1; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:638 → 719
    fn3; Fibronectin type III domain
    pfam13927
    Location:406 → 483
    Ig_3; Immunoglobulin domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  5. XM_011977019.1 → XP_011832409.1  neural cell adhesion molecule 1 isoform X6

    See identical proteins and their annotated locations for XP_011832409.1

    UniProtKB/TrEMBL
    A0A2K5Y715
    Related
    ENSMLEP00000011338.1, ENSMLET00000034761.1
    Conserved Domains (8) summary
    cd05869
    Location:306 → 402
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:124 → 190
    IG; Immunoglobulin
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:603 → 684
    fn3; Fibronectin type III domain
    pfam13927
    Location:411 → 483
    Ig_3; Immunoglobulin domain
    cd00096
    Location:211 → 216
    Ig; Ig strand A [structural motif]
    cd05865
    Location:20 → 116
    IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  6. XM_011977018.1 → XP_011832408.1  neural cell adhesion molecule 1 isoform X5

    See identical proteins and their annotated locations for XP_011832408.1

    Conserved Domains (6) summary
    cd05869
    Location:188 → 284
    Ig_NCAM-1; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00410
    Location:6 → 72
    IG_like; Immunoglobulin like
    cd00063
    Location:380 → 477
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:485 → 566
    fn3; Fibronectin type III domain
    pfam13927
    Location:293 → 365
    Ig_3; Immunoglobulin domain
    cl11960
    Location:93 → 189
    Ig; Immunoglobulin domain
Nucleotide Protein
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