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PRG2 proteoglycan 2, pro eosinophil major basic protein [ Colobus angolensis palliatus ]

Gene ID: 105527160, updated on 13-Mar-2024

Summary

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Gene symbol
PRG2
Gene description
proteoglycan 2, pro eosinophil major basic protein
See related
Ensembl:ENSCANG00000034805
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See PRG2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012119710.1 (6163635..6166986, complement)

NW_012119710.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X 3 Neighboring gene proteoglycan 3, pro eosinophil major basic protein 2 Neighboring gene solute carrier family 43 member 3 Neighboring gene reticulon 4 receptor like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012119710.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bone marrow proteoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012119710.1 Reference Cang.pa_1.0

    Range
    6163635..6166986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011963407.1 → XP_011818797.1  bone marrow proteoglycan isoform X3

    Conserved Domains (1) summary
    cd03598
    Location:53 → 163
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  2. XM_011963402.1 → XP_011818792.1  bone marrow proteoglycan isoform X2

    See identical proteins and their annotated locations for XP_011818792.1

    Conserved Domains (1) summary
    cd03598
    Location:58 → 174
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  3. XM_011963403.1 → XP_011818793.1  bone marrow proteoglycan isoform X2

    See identical proteins and their annotated locations for XP_011818793.1

    Conserved Domains (1) summary
    cd03598
    Location:58 → 174
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  4. XM_011963404.1 → XP_011818794.1  bone marrow proteoglycan isoform X2

    See identical proteins and their annotated locations for XP_011818794.1

    Conserved Domains (1) summary
    cd03598
    Location:58 → 174
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  5. XM_011963401.1 → XP_011818791.1  bone marrow proteoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2K5J1Q1
    Related
    ENSCANP00000022750.1, ENSCANT00000045733.1
    Conserved Domains (1) summary
    cd03598
    Location:98 → 214
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  6. XM_011963406.1 → XP_011818796.1  bone marrow proteoglycan isoform X2

    See identical proteins and their annotated locations for XP_011818796.1

    Conserved Domains (1) summary
    cd03598
    Location:58 → 174
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)

  7. XM_011963405.1 → XP_011818795.1  bone marrow proteoglycan isoform X2

    See identical proteins and their annotated locations for XP_011818795.1

    Conserved Domains (1) summary
    cd03598
    Location:58 → 174
    CLECT_EMBP_like; C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH)
Nucleotide Protein
Heading Accession and Version

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