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PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Colobus angolensis palliatus ]

Gene ID: 105526388, updated on 13-Mar-2024

Summary

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Gene symbol
PKD1L3
Gene description
polycystin 1 like 3, transient receptor potential channel interacting
See related
Ensembl:ENSCANG00000033286
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012112697.1 (4047921..4139887)

NW_012112697.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit alpha, mitochondrial-like Neighboring gene coiled-coil domain-containing protein 25-like Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene IST1 factor associated with ESCRT-III Neighboring gene zinc finger protein 821 Neighboring gene ataxin 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012112697.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012112697.1 Reference Cang.pa_1.0

    Range
    4047921..4139887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011962381.1 → XP_011817771.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

    UniProtKB/TrEMBL
    A0A2K5ISM7
    Related
    ENSCANP00000019698.1, ENSCANT00000042663.1
    Conserved Domains (4) summary
    cd00037
    Location:33 → 138
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:744 → 860
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam08016
    Location:1324 → 1556
    PKD_channel; Polycystin cation channel
    cl02559
    Location:634 → 673
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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