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CLEC16A C-type lectin domain containing 16A [ Colobus angolensis palliatus ]

Gene ID: 105525674, updated on 13-Mar-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
See related
Ensembl:ENSCANG00000008347
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012119043.1 (7521223..7755112)

NW_012119043.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene Dexi homolog Neighboring gene heterogeneous nuclear ribonucleoprotein C pseudogene Neighboring gene suppressor of cytokine signaling 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012119043.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012119043.1 Reference Cang.pa_1.0

    Range
    7521223..7755112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011961400.1 → XP_011816790.1  protein CLEC16A isoform X2

    UniProtKB/TrEMBL
    A0A2K5HD92
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein

  2. XM_011961399.1 → XP_011816789.1  protein CLEC16A isoform X1

    UniProtKB/TrEMBL
    A0A2K5HD92
    Related
    ENSCANP00000002295.1, ENSCANT00000009540.1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein
Nucleotide Protein
Heading Accession and Version

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