U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FCN1 ficolin 1 [ Colobus angolensis palliatus ]

Gene ID: 105522734, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
FCN1
Gene description
ficolin 1
See related
Ensembl:ENSCANG00000037627
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FCN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012117821.1 (3546167..3554860)

NW_012117821.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein FLJ46204 Neighboring gene olfactomedin 1 Neighboring gene ficolin-2-like Neighboring gene ficolin 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012117821.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ficolin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012117821.1 Reference Cang.pa_1.0

    Range
    3546167..3554860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011957324.1 → XP_011812714.1  ficolin-1

    UniProtKB/TrEMBL
    A0A2K5JHS4
    Related
    ENSCANP00000028389.1, ENSCANT00000051442.1
    Conserved Domains (2) summary
    pfam01391
    Location:51 → 107
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:115 → 325
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.