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AGRN agrin [ Colobus angolensis palliatus ]

Gene ID: 105522037, updated on 13-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
See related
Ensembl:ENSCANG00000032706
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012117555.1 (254400..286930)

NW_012117555.1Genomic Context describing neighboring genes Neighboring gene midkine pseudogene Neighboring gene ISG15 ubiquitin like modifier Neighboring gene chromosome unknown open reading frame, human C1orf159 Neighboring gene ring finger protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012117555.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled acetylcholine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012117555.1 Reference Cang.pa_1.0

    Range
    254400..286930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011956413.1 → XP_011811803.1  agrin

    UniProtKB/TrEMBL
    A0A2K5IPC5
    Related
    ENSCANP00000018554.1, ENSCANT00000041511.1
    Conserved Domains (7) summary
    smart00280
    Location:271 → 316
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:912 → 1036
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00054
    Location:1485 → 1517
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:203 → 243
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    pfam00053
    Location:575 → 617
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1581 → 1711
    Laminin_G_1; Laminin G domain
    pfam03146
    Location:25 → 103
    NtA; Agrin NtA domain
Nucleotide Protein
Heading Accession and Version

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