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HCFC1 host cell factor C1 [ Colobus angolensis palliatus ]

Gene ID: 105521632, updated on 13-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
Ensembl:ENSCANG00000031393
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012117400.1 (509169..533403)

NW_012117400.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105521634 Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene Rho GTPase activating protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012117400.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012117400.1 Reference Cang.pa_1.0

    Range
    509169..533403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011955885.1 → XP_011811275.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5IH56, A0A2K5IHP9
    Related
    ENSCANP00000015982.1, ENSCANT00000038918.1
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1901 → 1930
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  2. XM_011955886.1 → XP_011811276.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5IH56
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1900 → 1929
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  3. XM_011955888.1 → XP_011811278.1  host cell factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5IH56
    Related
    ENSCANP00000015994.1, ENSCANT00000038930.1
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1856 → 1885
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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