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MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Colobus angolensis palliatus ]

Gene ID: 105513564, updated on 13-Mar-2024

Summary

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Gene symbol
MDGA1
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 1
See related
Ensembl:ENSCANG00000030863
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See MDGA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012111475.1 (5481021..5544700)

NW_012111475.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 9 Neighboring gene zinc finger AN1-type containing 3 Neighboring gene putative uncharacterized protein FLJ45825 Neighboring gene coiled-coil domain containing 167 Neighboring gene cap methyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012111475.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012111475.1 Reference Cang.pa_1.0

    Range
    5481021..5544700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011944469.1 → XP_011799859.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5IEA6
    Related
    ENSCANP00000014891.1, ENSCANT00000037823.1
    Conserved Domains (6) summary
    cd06263
    Location:753 → 916
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00096
    Location:153 → 217
    Ig; Immunoglobulin domain
    smart00408
    Location:254 → 315
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:248 → 326
    IG_like; Immunoglobulin like
    pfam07679
    Location:539 → 630
    I-set; Immunoglobulin I-set domain
    pfam00629
    Location:753 → 917
    MAM; MAM domain, meprin/A5/mu

  2. XM_011944477.1 → XP_011799867.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5IE01, A0A2K5IEA6
    Related
    ENSCANP00000014874.1, ENSCANT00000037806.1
    Conserved Domains (6) summary
    cd06263
    Location:745 → 908
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00096
    Location:153 → 217
    Ig; Immunoglobulin domain
    smart00408
    Location:254 → 315
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:248 → 326
    IG_like; Immunoglobulin like
    pfam07679
    Location:539 → 630
    I-set; Immunoglobulin I-set domain
    pfam00629
    Location:745 → 909
    MAM; MAM domain, meprin/A5/mu
Nucleotide Protein
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