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SDCBP2 syndecan binding protein 2 [ Colobus angolensis palliatus ]

Gene ID: 105512786, updated on 13-Mar-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSCANG00000031073
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012115366.1 (3504672..3523552)

NW_012115366.1Genomic Context describing neighboring genes Neighboring gene NSFL1 cofactor Neighboring gene FKBP prolyl isomerase 1A Neighboring gene syntaphilin Neighboring gene fatty acid-binding protein, epidermal pseudogene Neighboring gene RAD21 cohesin complex component like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012115366.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012115366.1 Reference Cang.pa_1.0

    Range
    3504672..3523552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011943394.1 → XP_011798784.1  syntenin-2

    See identical proteins and their annotated locations for XP_011798784.1

    UniProtKB/TrEMBL
    A0A2K5IFK0
    Related
    ENSCANP00000015247.1, ENSCANT00000038180.1
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_011943395.1 → XP_011798785.1  syntenin-2

    See identical proteins and their annotated locations for XP_011798785.1

    UniProtKB/TrEMBL
    A0A2K5IFK0
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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