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GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 [ Colobus angolensis palliatus ]

Gene ID: 105511818, updated on 13-Mar-2024

Summary

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Gene symbol
GDPD5
Gene description
glycerophosphodiester phosphodiesterase domain containing 5
See related
Ensembl:ENSCANG00000037706
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See GDPD5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012115211.1 (965485..1019956)

NW_012115211.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 6 Neighboring gene serpin family H member 1 Neighboring gene kelch like family member 35 Neighboring gene ribosomal protein S3 Neighboring gene arrestin beta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012115211.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012115211.1 Reference Cang.pa_1.0

    Range
    965485..1019956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011942012.1 → XP_011797402.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    cd08608
    Location:227 → 581
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    COG0584
    Location:227 → 447
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    pfam02322
    Location:32 → 207
    Cyt_bd_oxida_II; Cytochrome bd terminal oxidase subunit II

  2. XM_011942013.1 → XP_011797403.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A2K5JI69
    Related
    ENSCANP00000028534.1, ENSCANT00000051597.1
    Conserved Domains (3) summary
    cd08608
    Location:227 → 576
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    COG0584
    Location:227 → 447
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
    pfam02322
    Location:32 → 207
    Cyt_bd_oxida_II; Cytochrome bd terminal oxidase subunit II

  3. XM_011942014.1 → XP_011797404.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A2K5JI81
    Related
    ENSCANP00000028536.1, ENSCANT00000051601.1
    Conserved Domains (2) summary
    cd08608
    Location:108 → 457
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    COG0584
    Location:108 → 328
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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