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CLEC5A C-type lectin domain containing 5A [ Colobus angolensis palliatus ]

Gene ID: 105511201, updated on 13-Mar-2024

Summary

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Gene symbol
CLEC5A
Gene description
C-type lectin domain containing 5A
See related
Ensembl:ENSCANG00000009922
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See CLEC5A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012115154.1 (10234346..10254120, complement)

NW_012115154.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 9A4-like Neighboring gene olfactory receptor 9A4-like Neighboring gene uncharacterized LOC105511202 Neighboring gene taste 2 receptor member 38 Neighboring gene maltase-glucoamylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012115154.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 5 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012115154.1 Reference Cang.pa_1.0

    Range
    10234346..10254120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011941320.1 → XP_011796710.1  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A2K5HED7
    Related
    ENSCANP00000002711.1, ENSCANT00000011022.1
    Conserved Domains (1) summary
    cd03593
    Location:48 → 162
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_011941318.1 → XP_011796708.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A2K5HEE2
    Related
    ENSCANP00000002716.1, ENSCANT00000011055.1
    Conserved Domains (1) summary
    cd03593
    Location:71 → 185
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_011941319.1 → XP_011796709.1  C-type lectin domain family 5 member A isoform X2

    Conserved Domains (1) summary
    cd03593
    Location:71 → 184
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
Heading Accession and Version

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