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CSPG5 chondroitin sulfate proteoglycan 5 [ Colobus angolensis palliatus ]

Gene ID: 105509750, updated on 13-Mar-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
See related
Ensembl:ENSCANG00000042258
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114932.1 (4867125..4884836)

NW_012114932.1Genomic Context describing neighboring genes Neighboring gene DExH-box helicase 30 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene uncharacterized protein C1orf100 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114932.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114932.1 Reference Cang.pa_1.0

    Range
    4867125..4884836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011939202.1 → XP_011794592.1  chondroitin sulfate proteoglycan 5 isoform X2

    UniProtKB/TrEMBL
    A0A2K5K7U1
    Related
    ENSCANP00000037160.1, ENSCANT00000060410.1
    Conserved Domains (2) summary
    pfam06566
    Location:1 → 134
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:308 → 426
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  2. XM_011939203.1 → XP_011794593.1  chondroitin sulfate proteoglycan 5 isoform X3

    Conserved Domains (2) summary
    pfam06566
    Location:1 → 134
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:308 → 399
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  3. XM_011939201.1 → XP_011794591.1  chondroitin sulfate proteoglycan 5 isoform X1

    Conserved Domains (1) summary
    pfam06566
    Location:1 → 134
    Chon_Sulph_att; Chondroitin sulphate attachment domain
Nucleotide Protein
Heading Accession and Version

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