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ACER3 alkaline ceramidase 3 [ Colobus angolensis palliatus ]

Gene ID: 105509634, updated on 18-Sep-2024

Summary

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Gene symbol
ACER3
Gene description
alkaline ceramidase 3
See related
Ensembl:ENSCANG00000036415
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See ACER3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114921.1 (6500631..6659544, complement)

NW_012114921.1Genomic Context describing neighboring genes Neighboring gene calpain 5 Neighboring gene olfactory marker protein Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene olfactory guanylyl cyclase GC-D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114921.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114921.1 Reference Cang.pa_1.0

    Range
    6500631..6659544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011938949.1 → XP_011794339.1  alkaline ceramidase 3 isoform X3

    See identical proteins and their annotated locations for XP_011794339.1

    Conserved Domains (1) summary
    pfam05875
    Location:1 → 164
    Ceramidase; Ceramidase

  2. XM_011938948.1 → XP_011794338.1  alkaline ceramidase 3 isoform X3

    See identical proteins and their annotated locations for XP_011794338.1

    Conserved Domains (1) summary
    pfam05875
    Location:1 → 164
    Ceramidase; Ceramidase

  3. XM_011938947.1 → XP_011794337.1  alkaline ceramidase 3 isoform X2

    UniProtKB/TrEMBL
    A0A2K5JAP5
    Related
    ENSCANP00000025988.1, ENSCANT00000048996.1
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 222
    Ceramidase; Ceramidase

  4. XM_011938946.1 → XP_011794336.1  alkaline ceramidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5JAZ3
    Related
    ENSCANP00000025986.1, ENSCANT00000048993.1
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 259
    Ceramidase; Ceramidase
Nucleotide Protein
Heading Accession and Version

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