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VCAM1 vascular cell adhesion molecule 1 [ Colobus angolensis palliatus ]

Gene ID: 105506900, updated on 13-Mar-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
See related
Ensembl:ENSCANG00000040297
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114500.1 (1099756..1119163)

NW_012114500.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 88 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene solute carrier family 30 member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114500.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114500.1 Reference Cang.pa_1.0

    Range
    1099756..1119163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011935184.1 → XP_011790574.1  vascular cell adhesion protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5JWL9
    Related
    ENSCANP00000033258.1, ENSCANT00000056484.1
    Conserved Domains (7) summary
    cd07689
    Location:116 → 214
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:238 → 298
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:232 → 308
    IG_like; Immunoglobulin like
    pfam07679
    Location:313 → 399
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:516 → 596
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:608 → 672
    Ig_3; Immunoglobulin domain
    cl11960
    Location:29 → 98
    Ig; Immunoglobulin domain

  2. XM_011935186.1 → XP_011790576.1  vascular cell adhesion protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5JWR3, A0A2K5JWT0
    Related
    ENSCANP00000033262.1, ENSCANT00000056488.1
    Conserved Domains (7) summary
    cd07689
    Location:116 → 214
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:238 → 298
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:232 → 308
    IG_like; Immunoglobulin like
    pfam07679
    Location:26 → 112
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:424 → 504
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:516 → 580
    Ig_3; Immunoglobulin domain
    cl11960
    Location:29 → 98
    Ig; Immunoglobulin domain

  3. XM_011935185.1 → XP_011790575.1  vascular cell adhesion protein 1 isoform X2

    Conserved Domains (6) summary
    cd07689
    Location:54 → 152
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:176 → 236
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:170 → 246
    IG_like; Immunoglobulin like
    pfam07679
    Location:251 → 337
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:454 → 534
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:546 → 610
    Ig_3; Immunoglobulin domain

  4. XM_011935187.1 → XP_011790577.1  vascular cell adhesion protein 1 isoform X4

    Conserved Domains (6) summary
    cd07689
    Location:116 → 214
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:238 → 298
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:232 → 308
    IG_like; Immunoglobulin like
    pfam07679
    Location:313 → 399
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:519 → 583
    Ig_3; Immunoglobulin domain
    cl11960
    Location:29 → 98
    Ig; Immunoglobulin domain
Nucleotide Protein
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