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LOC105505626 POC1 centriolar protein homolog B [ Colobus angolensis palliatus ]

Gene ID: 105505626, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105505626
Gene description
POC1 centriolar protein homolog B
See related
Ensembl:ENSCANG00000043354
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
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Genomic context

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See LOC105505626 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012110919.1 (436586..539428, complement)

NW_012110919.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105505606 Neighboring gene dual specificity phosphatase 6 Neighboring gene ATPase plasma membrane Ca2+ transporting 1 Neighboring gene mitochondrial ribosomal protein L2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012110919.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POC1 centriolar protein homolog B; polypeptide N-acetylgalactosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012110919.1 Reference Cang.pa_1.0

    Range
    436586..539428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011933510.1 → XP_011788900.1  POC1 centriolar protein homolog B isoform X2

    UniProtKB/TrEMBL
    A0A2K5KE57
    Related
    ENSCANP00000039378.1, ENSCANT00000062637.1
    Conserved Domains (3) summary
    COG2319
    Location:14 → 300
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:10 → 298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:63 → 100
    7WD40; WD40 repeat [structural motif]

  2. XM_011933519.1 → XP_011788909.1  POC1 centriolar protein homolog B isoform X3

    UniProtKB/TrEMBL
    A0A2K5KE63
    Related
    ENSCANP00000039381.1, ENSCANT00000062640.1
    Conserved Domains (3) summary
    COG2319
    Location:14 → 300
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:10 → 298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:63 → 100
    7WD40; WD40 repeat [structural motif]

  3. XM_011933502.1 → XP_011788892.1  polypeptide N-acetylgalactosaminyltransferase 4 isoform X1

    Conserved Domains (4) summary
    cd02510
    Location:135 → 429
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:131 → 427
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:443 → 573
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:443 → 571
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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