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RPE ribulose-5-phosphate-3-epimerase [ Colobus angolensis palliatus ]

Gene ID: 105504770, updated on 13-Mar-2024

Summary

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Gene symbol
RPE
Gene description
ribulose-5-phosphate-3-epimerase
See related
Ensembl:ENSCANG00000031119
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See RPE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012123487.1 (10815940..10837862, complement)

NW_012123487.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 1 Neighboring gene acyl-CoA dehydrogenase long chain Neighboring gene KAT8 regulatory NSL complex subunit 1 like Neighboring gene unc-80 homolog, NALCN channel complex subunit Neighboring gene zinc finger protein SNAI1 pseudogene Neighboring gene microtubule associated protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012123487.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribulose-phosphate 3-epimerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012123487.1 Reference Cang.pa_1.0

    Range
    10815940..10837862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011932333.1 → XP_011787723.1  ribulose-phosphate 3-epimerase isoform X3

    See identical proteins and their annotated locations for XP_011787723.1

    UniProtKB/TrEMBL
    A0A2K5IG37
    Related
    ENSCANP00000015422.1, ENSCANT00000038355.1
    Conserved Domains (1) summary
    cd00429
    Location:6 → 185
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  2. XM_011932334.1 → XP_011787724.1  ribulose-phosphate 3-epimerase isoform X4

    See identical proteins and their annotated locations for XP_011787724.1

    UniProtKB/TrEMBL
    A0A2K5IFS8, A0A2K5IFU7
    Related
    ENSCANP00000015416.1, ENSCANT00000038349.1
    Conserved Domains (1) summary
    cd00429
    Location:6 → 188
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  3. XM_011932332.1 → XP_011787722.1  ribulose-phosphate 3-epimerase isoform X2

    UniProtKB/TrEMBL
    A0A2K5IFS8, A0A2K5IG04
    Related
    ENSCANP00000015476.1, ENSCANT00000038409.1
    Conserved Domains (2) summary
    cd00429
    Location:6 → 191
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...
    pfam13900
    Location:186 → 220
    GVQW; Putative domain of unknown function

  4. XM_011932336.1 → XP_011787726.1  ribulose-phosphate 3-epimerase isoform X6

    See identical proteins and their annotated locations for XP_011787726.1

    UniProtKB/TrEMBL
    A0A2K5IG65
    Conserved Domains (1) summary
    cd00429
    Location:8 → 154
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  5. XM_011932337.1 → XP_011787727.1  ribulose-phosphate 3-epimerase isoform X7

    See identical proteins and their annotated locations for XP_011787727.1

    UniProtKB/TrEMBL
    A0A2K5IG65
    Related
    ENSCANP00000015452.1, ENSCANT00000038385.1
    Conserved Domains (1) summary
    cd00429
    Location:1 → 146
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  6. XM_011932330.1 → XP_011787720.1  ribulose-phosphate 3-epimerase isoform X1

    See identical proteins and their annotated locations for XP_011787720.1

    UniProtKB/TrEMBL
    A0A2K5IFS8
    Conserved Domains (1) summary
    cd00429
    Location:6 → 214
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  7. XM_011932335.1 → XP_011787725.1  ribulose-phosphate 3-epimerase isoform X5

    See identical proteins and their annotated locations for XP_011787725.1

    UniProtKB/TrEMBL
    A0A2K5IG65
    Conserved Domains (1) summary
    cd00429
    Location:2 → 174
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

  8. XM_011932338.1 → XP_011787728.1  ribulose-phosphate 3-epimerase isoform X7

    See identical proteins and their annotated locations for XP_011787728.1

    UniProtKB/TrEMBL
    A0A2K5IG65
    Conserved Domains (1) summary
    cd00429
    Location:1 → 146
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...
Nucleotide Protein
Heading Accession and Version

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