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CNTN5 contactin 5 [ Colobus angolensis palliatus ]

Gene ID: 105500920, updated on 13-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
Ensembl:ENSCANG00000030445
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012120709.1 (5363636..6685202)

NW_012120709.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene zinc finger protein 614 pseudogene Neighboring gene replication protein A 32 kDa subunit pseudogene Neighboring gene Rho GTPase activating protein 42 Neighboring gene uncharacterized LOC105500924 Neighboring gene transmembrane protein 133 Neighboring gene progesterone receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012120709.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012120709.1 Reference Cang.pa_1.0

    Range
    5363636..6685202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011926604.1 → XP_011781994.1  contactin-5

    See identical proteins and their annotated locations for XP_011781994.1

    UniProtKB/TrEMBL
    A0A2K5IBX6, A0A2K5ICE0
    Conserved Domains (6) summary
    cd04969
    Location:496 → 568
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05848
    Location:98 → 191
    Ig1_Contactin-5; First Ig domain of contactin-5
    smart00410
    Location:205 → 278
    IG_like; Immunoglobulin like
    cd00063
    Location:671 → 768
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:489 → 568
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:300 → 387
    Ig; Immunoglobulin domain

  2. XM_011926603.1 → XP_011781993.1  contactin-5

    See identical proteins and their annotated locations for XP_011781993.1

    UniProtKB/TrEMBL
    A0A2K5IBX6, A0A2K5ICE0
    Related
    ENSCANP00000014132.1, ENSCANT00000037053.1
    Conserved Domains (6) summary
    cd04969
    Location:496 → 568
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05848
    Location:98 → 191
    Ig1_Contactin-5; First Ig domain of contactin-5
    smart00410
    Location:205 → 278
    IG_like; Immunoglobulin like
    cd00063
    Location:671 → 768
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:489 → 568
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:300 → 387
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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