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B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 [ Colobus angolensis palliatus ]

Gene ID: 105500499, updated on 13-Mar-2024

Summary

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Gene symbol
B4GALNT1
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 1
See related
Ensembl:ENSCANG00000028468
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See B4GALNT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012120376.1 (6007160..6014243)

NW_012120376.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L13a pseudogene Neighboring gene nucleolar protein 56 pseudogene Neighboring gene Solute carrier family 26 member 10 Neighboring gene uncharacterized LOC105500497 Neighboring gene uncharacterized LOC105500496 Neighboring gene Rho guanine nucleotide exchange factor 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012120376.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012120376.1 Reference Cang.pa_1.0

    Range
    6007160..6014243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011926006.1 → XP_011781396.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5I0L4, A0A2K5I0U0
    Related
    ENSCANP00000010148.1, ENSCANT00000033034.1
    Conserved Domains (2) summary
    COG0463
    Location:278 → 376
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:280 → 429
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_011926005.1 → XP_011781395.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5I0U0
    Related
    ENSCANP00000010154.1, ENSCANT00000033040.1
    Conserved Domains (2) summary
    COG0463
    Location:300 → 398
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:302 → 451
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_011926007.1 → XP_011781397.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5I0J7, A0A2K5I0U0
    Conserved Domains (2) summary
    COG0463
    Location:223 → 321
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:225 → 374
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
Heading Accession and Version

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