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SDCBP2 syndecan binding protein 2 [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105496106, updated on 13-Mar-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSMNEG00000045047
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012011800.1 (2279905..2299555)

NW_012011800.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 1A Neighboring gene uncharacterized LOC105496108 Neighboring gene uncharacterized LOC105496107 Neighboring gene syntaphilin Neighboring gene RAD21 cohesin complex component like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012011800 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012011800.1 Reference Mnem_1.0

    Range
    2279905..2299555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011766212.2 → XP_011764514.1  syntenin-2 isoform X2

    See identical proteins and their annotated locations for XP_011764514.1

    UniProtKB/TrEMBL
    A0A2K6EA04
    Related
    ENSMNEP00000044998.1, ENSMNET00000069509.1
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_011766213.2 → XP_011764515.1  syntenin-2 isoform X2

    See identical proteins and their annotated locations for XP_011764515.1

    UniProtKB/TrEMBL
    A0A2K6EA04
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_011766211.2 → XP_011764513.2  syntenin-2 isoform X1

    Conserved Domains (2) summary
    cd00136
    Location:153 → 221
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cd00992
    Location:227 → 300
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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