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ATRN attractin [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105481592, updated on 13-Mar-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
See related
Ensembl:ENSMNEG00000007522
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012018910.1 (12582133..12782622, complement)

NW_012018910.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene GDNF family receptor alpha 4 Neighboring gene splicing factor 3A subunit 3 pseudogene Neighboring gene beta-galactoside alpha-2,6-sialyltransferase 1 pseudogene Neighboring gene uncharacterized LOC105481598

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012018910 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012018910.1 Reference Mnem_1.0

    Range
    12582133..12782622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011741276.2 → XP_011739578.1  attractin isoform X3

    UniProtKB/TrEMBL
    A0A2K6AR93
    Related
    ENSMNEP00000001677.1, ENSMNET00000008234.1
    Conserved Domains (7) summary
    cd03597
    Location:789 → 921
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:133 → 248
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1063 → 1108
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:502 → 551
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:933 → 984
    PSI; Plexin repeat
    pfam13415
    Location:351 → 401
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:391 → 429
    Kelch_5; Kelch motif

  2. XM_011741274.2 → XP_011739576.1  attractin isoform X1

    UniProtKB/TrEMBL
    A0A2K6ARB3
    Related
    ENSMNEP00000001689.1, ENSMNET00000008276.1
    Conserved Domains (7) summary
    cd03597
    Location:789 → 921
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:133 → 248
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1063 → 1108
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:502 → 551
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:933 → 984
    PSI; Plexin repeat
    pfam13415
    Location:351 → 401
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:391 → 429
    Kelch_5; Kelch motif

  3. XM_011741275.2 → XP_011739577.1  attractin isoform X2

    Conserved Domains (7) summary
    cd03597
    Location:789 → 921
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:133 → 248
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1063 → 1108
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:502 → 551
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:933 → 984
    PSI; Plexin repeat
    pfam13415
    Location:351 → 401
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:391 → 429
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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