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ZC3H12B zinc finger CCCH-type containing 12B [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105476707, updated on 13-Mar-2024

Summary

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Gene symbol
ZC3H12B
Gene description
zinc finger CCCH-type containing 12B
See related
Ensembl:ENSMNEG00000043003
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ZC3H12B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012016466.1 (6835696..7267605, complement)

NW_012016466.1Genomic Context describing neighboring genes Neighboring gene moesin Neighboring gene LAS1 like ribosome biogenesis factor Neighboring gene thioredoxin-like protein AAED1 pseudogene Neighboring gene mortality factor 4-like protein 1 pseudogene Neighboring gene 60S ribosomal protein L35 Neighboring gene zinc finger C4H2-type containing Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012016466 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012016466.1 Reference Mnem_1.0

    Range
    6835696..7267605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011732879.2 → XP_011731181.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731181.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  2. XM_011732883.2 → XP_011731185.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731185.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  3. XM_024791214.1 → XP_024646982.1  probable ribonuclease ZC3H12B isoform X1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  4. XM_011732876.2 → XP_011731178.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731178.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  5. XM_011732885.2 → XP_011731187.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731187.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  6. XM_024791216.1 → XP_024646984.1  probable ribonuclease ZC3H12B isoform X2

    Conserved Domains (1) summary
    pfam11977
    Location:190 → 345
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

  7. XM_011732875.2 → XP_011731177.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731177.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  8. XM_024791215.1 → XP_024646983.1  probable ribonuclease ZC3H12B isoform X1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  9. XM_011732881.2 → XP_011731183.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731183.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  10. XM_011732878.2 → XP_011731180.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731180.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  11. XM_011732877.2 → XP_011731179.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731179.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  12. XM_011732882.2 → XP_011731184.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731184.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Related
    ENSMNEP00000040173.1, ENSMNET00000064665.1
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  13. XM_011732884.1 → XP_011731186.1  probable ribonuclease ZC3H12B isoform X1

    See identical proteins and their annotated locations for XP_011731186.1

    UniProtKB/TrEMBL
    A0A2K6DW84
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Nucleotide Protein
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