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Scgdelta sarcoglycan delta [ Pogonomyrmex barbatus (red harvester ant) ]

Gene ID: 105432243, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:LOC105432243
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogonomyrmex barbatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Pogonomyrmex
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Pbar_UMD_V03 (GCF_000187915.1) Unplaced Scaffold NW_011933303.1 (783903..972017, complement)

NW_011933303.1Genomic Context describing neighboring genes Neighboring gene protein Cep78 homolog Neighboring gene phosphodiesterase 8 Neighboring gene uncharacterized LOC105432273 Neighboring gene Regulator of cullins 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011933303 Unplaced Scaffold Reference Pbar_UMD_V03

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogonomyrmex barbatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pbar_UMD_V03

Genomic

  1. NW_011933303.1 Reference Pbar_UMD_V03

    Range
    783903..972017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011646957.1 → XP_011645259.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6I9WYS7
    Related
    XP_011645259.1, XM_011646957.1
    Conserved Domains (1) summary
    pfam04790
    Location:138 → 411
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025219461.1 → XP_025075246.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6I9WQ12
    Related
    XP_025075246.1, XM_025219461.1
    Conserved Domains (1) summary
    pfam04790
    Location:54 → 332
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_011646965.2 → XP_011645267.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6I9WQ12
    Related
    XP_011645267.1, XM_011646965.2
    Conserved Domains (1) summary
    pfam04790
    Location:54 → 332
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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