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LOC105422894 uncharacterized LOC105422894 [ Pogonomyrmex barbatus (red harvester ant) ]

Gene ID: 105422894, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105422894
Gene description
uncharacterized LOC105422894
See related
EnsemblRapid:LOC105422894
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pogonomyrmex barbatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Pogonomyrmex
Also known as
vkr
Orthologs
honey bee all
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Genomic context

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See LOC105422894 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Pbar_UMD_V03 (GCF_000187915.1) Unplaced Scaffold NW_011933420.1 (2150055..2180175, complement)

NW_011933420.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105422891 Neighboring gene esterase E4-like Neighboring gene structural maintenance of chromosomes 5 Neighboring gene uncharacterized LOC105422893 Neighboring gene small lysine-rich protein 1 Neighboring gene abhydrolase domain-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011933420 Unplaced Scaffold Reference Pbar_UMD_V03

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The venus kinase receptor (VKR) family: structure and evolution. Vanderstraete M, et al. BMC Genomics, 2013 May 30. PMID 23721482, Free PMC Article
  2. Schistosoma mansoni: structural and biochemical characterization of two distinct Venus Kinase Receptors. Gouignard N, et al. Exp Parasitol, 2012 Sep. PMID 21616067
  3. An unusual receptor tyrosine kinase of Schistosoma mansoni contains a Venus Flytrap module. Vicogne J, et al. Mol Biochem Parasitol, 2003 Jan. PMID 12554084
  4. A new family of receptor tyrosine kinases with a venus flytrap binding domain in insects and other invertebrates activated by aminoacids. Ahier A, et al. PLoS One, 2009 May 21. PMID 19461966, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized LOC105422894
Names
venus kinase receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305622.1 → NP_001292551.1  uncharacterized LOC105422894 precursor

    See identical proteins and their annotated locations for NP_001292551.1

    Status: PROVISIONAL

    Source sequence(s)
    BK008751
    UniProtKB/TrEMBL
    S6G3B2
    Related
    NP_001292551.1, NM_001305622.1
    Conserved Domains (4) summary
    cd06366
    Location:385 → 779
    PBP1_GABAb_receptor; Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)
    smart00221
    Location:893 → 1160
    STYKc; Protein kinase; unclassified specificity
    cd00192
    Location:897 → 1161
    PTKc; Catalytic domain of Protein Tyrosine Kinases
    pfam01094
    Location:405 → 761
    ANF_receptor; Receptor family ligand binding region

RefSeqs of Annotated Genomes: Pogonomyrmex barbatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pbar_UMD_V03

Genomic

  1. NW_011933420.1 Reference Pbar_UMD_V03

    Range
    2150055..2180175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011632454.1 → XP_011630756.1  uncharacterized LOC105422894 isoform X1

    UniProtKB/TrEMBL
    A0A6I9VPW5
    Related
    XP_011630756.1, XM_011632454.1
    Conserved Domains (4) summary
    cd06366
    Location:402 → 796
    PBP1_GABAb_receptor; Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)
    smart00221
    Location:910 → 1177
    STYKc; Protein kinase; unclassified specificity
    cd00192
    Location:914 → 1178
    PTKc; Catalytic domain of Protein Tyrosine Kinases
    pfam01094
    Location:422 → 778
    ANF_receptor; Receptor family ligand binding region
Nucleotide Protein
Heading Accession and Version

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