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LOC105379477 uncharacterized LOC105379477 [ Homo sapiens (human) ]

Gene ID: 105379477, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105379477
Gene description
uncharacterized LOC105379477
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in gall bladder (RPKM 1.4), endometrium (RPKM 0.8) and 24 other tissues See more
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Genomic context

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See LOC105379477 in Genome Data Viewer
Location:
20q11.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (29448517..29458181)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (31078186..31090455)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene retinoic acid receptor responder 2 pseudogene 11 Neighboring gene angiogenic factor with G-patch and FHA domains 1 pseudogene 10 Neighboring gene double homeobox 4 like 35 (pseudogene) Neighboring gene FSHD region gene 1 family member E, pseudogene Neighboring gene family with sequence similarity 242 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134504.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    ABBA01031663, ABBA01031664, BC039483

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    29448517..29458181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    31078186..31090455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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