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FAM242E family with sequence similarity 242 member E [ Homo sapiens (human) ]

Gene ID: 105379438, updated on 10-Oct-2023

Summary

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Official Symbol
FAM242Eprovided by HGNC
Official Full Name
family with sequence similarity 242 member Eprovided by HGNC
Primary source
HGNC:HGNC:53875
See related
Ensembl:ENSG00000229697 AllianceGenome:HGNC:53875
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 6.0) See more
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Genomic context

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See FAM242E in Genome Data Viewer
Location:
9q13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (61906377..61911052, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (41594256..41598931)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379807 Neighboring gene uncharacterized LOC102723678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:45003363-45004205 Neighboring gene family with sequence similarity 27 member E4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:45762061-45762809 Neighboring gene uncharacterized LOC107987007 Neighboring gene uncharacterized LOC107987008

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184153.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391987
    Related
    ENST00000612650.1

  2. NR_184154.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391987
    Related
    ENST00000614732.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    61906377..61911052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    41594256..41598931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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