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LOC105379368 uncharacterized LOC105379368 [ Homo sapiens (human) ]

Gene ID: 105379368, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379368
Gene description
uncharacterized LOC105379368
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379368 in Genome Data Viewer
Location:
8p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (34967477..34973504)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (35242806..35248849)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1288 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:34714442-34715641 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:34717375-34718364 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:34764264-34765148 Neighboring gene ribosomal protein L21 pseudogene 80 Neighboring gene uncharacterized LOC105379369 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:34939898-34941097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:35034197-35034738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:35143680-35144180 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:35144181-35144681 Neighboring gene unc-5 netrin receptor D Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:35234331-35234832 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:35234833-35235332 Neighboring gene MPRA-validated peak6991 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:35344139-35345338 Neighboring gene LSM12 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    34967477..34973504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949663.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    35242806..35248849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078585.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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