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LOC105379362 uncharacterized LOC105379362 [ Homo sapiens (human) ]

Gene ID: 105379362, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105379362
Gene description
uncharacterized LOC105379362
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 1.5), testis (RPKM 0.9) and 17 other tissues See more
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Genomic context

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See LOC105379362 in Genome Data Viewer
Location:
8p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (32927977..33050049)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (33198092..33320162)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene neuregulin 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:32504369-32504970 Neighboring gene uncharacterized LOC128092250 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579026-32579596 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579597-32580167 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:32617179-32618378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27217 Neighboring gene RNA, U6 small nuclear 663, pseudogene Neighboring gene nuclear-encoded mitochondrial tRNA-Gln (TTG) 11-1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32858695-32859305 Neighboring gene MT-ND2 pseudogene 32 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:32986477-32987676 Neighboring gene MT-ND1 pseudogene 6 Neighboring gene RAN pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:33201768-33202321 Neighboring gene NANOG hESC enhancer GRCh37_chr8:33210014-33210633 Neighboring gene RNA, U6 small nuclear 528, pseudogene Neighboring gene RNA binding motif protein 4 pseudogene Neighboring gene fucosyltransferase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188148.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  2. NR_188149.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  3. NR_188150.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  4. NR_188151.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  5. NR_188152.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  6. NR_188153.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  7. NR_188154.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  8. NR_188155.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

  9. NR_188156.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090204, AC113209

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    32927977..33050049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    33198092..33320162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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