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LOC105379335 uncharacterized LOC105379335 [ Homo sapiens (human) ]

Gene ID: 105379335, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379335
Gene description
uncharacterized LOC105379335
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379335 in Genome Data Viewer
Location:
8p21.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (26121723..26128045, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (26397336..26403659, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723395 Neighboring gene uncharacterized LOC124901914 Neighboring gene EBF transcription factor 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25756917-25757418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25757419-25757918 Neighboring gene NANOG hESC enhancer GRCh37_chr8:25799738-25800248 Neighboring gene NANOG hESC enhancer GRCh37_chr8:25824142-25824643 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25836359-25836876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25836877-25837392 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:25846281-25846859 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:25846860-25847437 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:25847438-25848016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:25894716-25895299 Neighboring gene Sharpr-MPRA regulatory region 188 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:25905445-25906237 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:25906636-25907515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25908395-25909274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25909275-25910152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:25935631-25936377 Neighboring gene uncharacterized LOC105379336 Neighboring gene MPRA-validated peak6960 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:26008986-26009594 Neighboring gene RNA, 5S ribosomal pseudogene 258 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:26035468-26035634 Neighboring gene MPRA-validated peak6961 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19037 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:26087585-26088201 Neighboring gene matrix metallopeptidase 12 (macrophage elastase) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    26121723..26128045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949599.2 RNA Sequence

  2. XR_949598.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    26397336..26403659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078820.1 RNA Sequence

  2. XR_007078819.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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