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LOC105379328 uncharacterized LOC105379328 [ Homo sapiens (human) ]

Gene ID: 105379328, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379328
Gene description
uncharacterized LOC105379328
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379328 in Genome Data Viewer
Location:
8p21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (24089989..24106304)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (24365059..24381375)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:23747587-23748786 Neighboring gene uncharacterized LOC107986931 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:23775304-23775840 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:23775841-23776377 Neighboring gene stanniocalcin 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:23778915-23779185 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:23836477-23837459 Neighboring gene Sharpr-MPRA regulatory region 10080 Neighboring gene RNA, U1 small nuclear 148, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:23963874-23964511 Neighboring gene MPRA-validated peak6951 silencer Neighboring gene ADAM7, ADAMDEC1 and ADAM28 antisense RNA 1 Neighboring gene ADAM metallopeptidase domain 28 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:24244666-24245865 Neighboring gene ADAM like decysin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    24089989..24106304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949589.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    24365059..24381375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078805.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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