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LOC105379224 uncharacterized LOC105379224 [ Homo sapiens (human) ]

Gene ID: 105379224, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379224
Gene description
uncharacterized LOC105379224
See related
Ensembl:ENSG00000253130
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379224 in Genome Data Viewer
Location:
8p23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (8561361..8574041)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11170351..11183031, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (8418871..8431551)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2949 Neighboring gene uncharacterized LOC107986913 Neighboring gene Sharpr-MPRA regulatory region 2598 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8324360-8325559 Neighboring gene long intergenic non-protein coding RNA 2950 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8328681-8329307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18897 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18898 Neighboring gene Sharpr-MPRA regulatory region 7090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8440333-8440832 Neighboring gene RNA, 7SL, cytoplasmic 178, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26972 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18899 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26973 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8522058-8523257 Neighboring gene uncharacterized LOC124901881

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • CTD-3023L14.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188124.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114550
    Related
    ENST00000522661.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    8561361..8574041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    4778081..4790764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11170351..11183031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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