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CTB-1I21.1 uncharacterized CTB-1I21.1 [ Homo sapiens (human) ]

Gene ID: 105379191, updated on 22-Oct-2024

Summary

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Gene symbol
CTB-1I21.1
Gene description
uncharacterized CTB-1I21.1
See related
Ensembl:ENSG00000249803
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward brain (RPKM 1.3) See more
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Genomic context

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See CTB-1I21.1 in Genome Data Viewer
Location:
5q31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (136734931..136763504)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (137257580..137286149)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (136070620..136099193)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 13 Neighboring gene uncharacterized LOC124901076 Neighboring gene MPRA-validated peak5484 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:135880336-135881535 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:135887367-135887882 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:135900628-135901278 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:135901279-135901929 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16380 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:136021270-136021774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23181 Neighboring gene ANKRD49 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:136288693-136289609 Neighboring gene RNA, 5S ribosomal pseudogene 193

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188336.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109439, AC114301
    Related
    ENST00000662288.1

  2. NR_188337.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109439, AC114301
    Related
    ENST00000667761.1

  3. NR_188338.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109439, AC114301
    Related
    ENST00000656447.1

  4. NR_188339.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109439, AC114301
    Related
    ENST00000502421.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    136734931..136763504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    137257580..137286149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials