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LOC105379171 uncharacterized LOC105379171 [ Homo sapiens (human) ]

Gene ID: 105379171, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379171
Gene description
uncharacterized LOC105379171
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379171 in Genome Data Viewer
Location:
5q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (130337409..130379896)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (130856275..130898776)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate synthase 3 Neighboring gene RNA, 5S ribosomal pseudogene 191 Neighboring gene OCT4-NANOG hESC enhancers GRCh37_chr5:129502144-129502824 and GRCh37_chr5:129502825-129503503 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:129541966-129543165 Neighboring gene NANOG hESC enhancer GRCh37_chr5:129563309-129563853 Neighboring gene RNA, U7 small nuclear 53 pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:129865421-129866620 Neighboring gene ARF like GTPase 2 binding protein pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    130337409..130379896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742880.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    130856275..130898776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075937.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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